AMBER Archive (2003)

Subject: Energy calculation

From: Sichun Yang (syang_at_physics.ucsd.edu)
Date: Wed Feb 19 2003 - 16:25:45 CST

Dear All,

I have a naive question.
When I have got the trajectory, which program can I use to get the local
energy (e.g. BOND,
Torsion) for a short peptide(say, 5 residues) instead of the whole system?

Sorry if this question has been asked and answered before.

Thanks,
Sichun