AMBER Archive (2003)

Subject: (no subject)

From: Majid moghaddam (erfani_m_at_yahoo.com)
Date: Sun Feb 16 2003 - 07:57:21 CST

Hello
I am new to amber. To make input files I have to
modify pdb file. Then since there are 6 CYX residues
in my protein I have to determine the disulfide bonds
using bond command as described in manual:
bond xxx.3.SG xxx.19.SG
ok.
After using "saveamberparm" command following messages
appear and parameter file is not saved:

could not find angle parameter: HS - SH - S
could not find angle parameter: SH - S - CT
could not find angle parameter: CT - SH - S
no tortion terms for HS - SH - S - CT
no tortion terms for CT - SH - S - CT

I would appreciate if someone help me
Best regards

__________________________________________________
Do you Yahoo!?
Yahoo! Shopping - Send Flowers for Valentine's Day
http://shopping.yahoo.com