AMBER Archive (2003)

Subject: Re: essential dynamics

From: David A. Case (case_at_scripps.edu)
Date: Fri Feb 07 2003 - 15:19:04 CST


On Fri, Feb 07, 2003, Lishan Yao wrote:

> Is there any program (software) which can read amber MD trajectory file and
> then do essential dynamics analysis for the trajectory?
>

The "quasih" program in the amber suite does this sort of analysis. See
that section of the Users' Manual.

..regards....dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ==================================================================