AMBER Archive (2003)

Subject: Re: SASA calculation

From: Michael Ford (mford_at_ccrc.uga.edu)
Date: Mon Feb 03 2003 - 17:22:26 CST

The MMPBSA does a surface area calculation. The scripts are automated.
You could just use this program and ignore what you didn't want (MM
energies).

Mike Ford

Luis Gracia wrote:

> Hi everybody!
>
> Does somebody know how to calculate the solvent accesible surface area
> for each set in an amber trajectory file? I was thinking in converting
> them to pdb files and use any of the available program outside. But may
> be you know about something more straighforward.
>
> Best, Luis