AMBER Archive (2003)

Subject: structure image

From: Xiang, Tian-Xiang (txian2_at_email.uky.edu)
Date: Mon Jan 27 2003 - 09:31:46 CST


Dear Sir:

I am trying to prepare an image of my simulated lipid bilayer structure obtained from
sander/amber using a graphics program like VMD, but some molecules are always
stretched out of the central box. This can not be solved by using "image" command in ptraj. The one way I can think of is that somehow one can get the image of the central box along with the neighboring boxes. Anyone has ideas how to do this or a better way?

Thanks

T.-X. Xiang