AMBER Archive (2003)

Subject: Dummy-parameters in Amber?

From: meiselba (Heike.Meiselbach_at_organik.uni-erlangen.de)
Date: Thu Jan 23 2003 - 04:39:17 CST

Dear Ambers,

I want to calculate a FEP for a organic molecule. My question is, when I
perturb a "C" to nothing - what is the dummy? Is it DC or DH and how are
the bonds, angles an torsions for the dummys defined?

Thank you in advance,

Heike