AMBER Archive (2003)

Subject: terminal phosphate group in RNA

From: Mahadevan Seetharaman (maha_at_vwl.medc.umn.edu)
Date: Thu Jan 16 2003 - 16:10:13 CST

Hi All,

Can someone give me suggestions for treating a terminal phosphate group in
a RNA molecule.

I want a net charge of -1 and I am not sure about the individual charges
and atom types on the phosphorous and the oxygen atoms... any reference
on this issue would also be greatly appreciated.

Thanx,
Mahadevan