AMBER Archive (2003)

Subject: pdb_to_mass

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What is the proper command line syntax for pdb_to_mass? When I enter
"pdb_to_mass" followed by the pdb filename I get this output (to a file
if a filename follows the pdb filename):

    1.01 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00
    1.01 12.00 1.01 12.00 14.00 1.01 1.01 14.00
12.00 16.00
   12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00
    1.01 16.00 12.00 1.01 14.00 12.00 1.01 12.00
1.01 12.00
   14.00 1.01 1.01 14.00 12.00 16.00 12.00 1.01 12.00
error in mass parsing 1
error in mass parsing 2
   16.00
   30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01
   14.00 12.00 1.01 14.00 12.00 12.00 14.00 1.01
1.01 14.00
   12.00 1.01 14.00 12.00 12.00 1.01 12.00 error in mass
parsing 1
error in mass parsing 2
   16.00 30.97 16.00
   16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00
    1.01 12.00 1.01 12.00 14.00 1.01 1.01 14.00
12.00 16.00
   12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00
    1.01 16.00 12.00 1.01 14.00 12.00 1.01 14.00
12.00 12.00
   16.00 14.00 1.01 12.00 14.00 1.01 1.01 14.00
12.00 12.00
    1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01
   16.00 12.00 1.01 14.00 12.00 1.01 12.00 1.01
12.00 14.00
    1.01 1.01 14.00 12.00 16.00 12.00 1.01 12.00 error in
mass parsing 1
error in mass parsing 2
   16.00 30.97
   16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00
   12.00 1.01 14.00 12.00 12.00 16.00 14.00 1.01
12.00 14.00
    1.01 1.01 14.00 12.00 12.00 1.01 12.00 error in mass
parsing 1
error in mass parsing 2
   16.00 30.97 16.00
   16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00
    1.01 12.00 12.00 1.01 1.01 1.01 12.00 16.00
14.00 1.01
   12.00 16.00 12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00
   12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00 1.01 14.00
   12.00 12.00 16.00 14.00 1.01 12.00 14.00 1.01
1.01 14.00
   12.00 12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00
error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00 1.01
14.00 12.00
   12.00 16.00 14.00 1.01 12.00 14.00 1.01 1.01
14.00 12.00
   12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 1.01 1.01 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01
   16.00 12.00 1.01 14.00 12.00 1.01 12.00 1.01
12.00 14.00
    1.01 1.01 14.00 12.00 16.00 12.00 1.01 12.00 error in
mass parsing 1
error in mass parsing 2
   16.00 30.97
   16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00
   12.00 1.01 12.00 1.01 12.00 14.00 1.01 1.01
14.00 12.00
   16.00 12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00
error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00 1.01
14.00 12.00
   12.00 14.00 1.01 1.01 14.00 12.00 1.01 14.00
12.00 12.00
    1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01
   16.00 12.00 1.01 14.00 12.00 1.01 12.00 1.01
12.00 14.00
    1.01 1.01 14.00 12.00 16.00 12.00 1.01 12.00 error in
mass parsing 1
error in mass parsing 2
   16.00 30.97
   16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00
   12.00 1.01 14.00 12.00 12.00 16.00 14.00 1.01
12.00 14.00
    1.01 1.01 14.00 12.00 12.00 1.01 12.00 error in mass
parsing 1
error in mass parsing 2
   16.00 30.97 16.00
   16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01 14.00 12.00
    1.01 12.00 1.01 12.00 14.00 1.01 1.01 14.00
12.00 16.00
   12.00 1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00
    1.01 16.00 12.00 1.01 14.00 12.00 1.01 14.00
12.00 12.00
   16.00 14.00 1.01 12.00 14.00 1.01 1.01 14.00
12.00 12.00
    1.01 12.00 error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01
   16.00 12.00 1.01 14.00 12.00 1.01 12.00 12.00
1.01 1.01
    1.01 12.00 16.00 14.00 1.01 12.00 16.00 12.00
1.01 12.00
error in mass parsing 1
error in mass parsing 2
   16.00 30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00
    1.01 14.00 12.00 1.01 14.00 12.00 12.00 16.00
14.00 1.01
   12.00 14.00 1.01 1.01 14.00 12.00 12.00 1.01 12.00
error in mass parsing 1
error in mass parsing 2
   16.00
   30.97 16.00 16.00 16.00 12.00 error in mass parsing 1
error in mass parsing 2
   12.00 1.01 16.00 12.00 1.01
   14.00 12.00 1.01 14.00 12.00 12.00 16.00 14.00
1.01 12.00
   14.00 1.01 1.01 14.00 12.00 12.00 1.01 12.00 error in
mass parsing 1
error in mass parsing 2
   16.00 1.01

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