AMBER Archive (2003)

Subject: Re: the unit of velocity

From: Jian Zhang (jzhang_001_at_yahoo.com.cn)
Date: Wed Jan 08 2003 - 20:12:15 CST

Thank you very much!

Regards
zj

--- "David A. Case" <case_at_scripps.edu> wrote:
> On Tue, Jan 07, 2003, Jian Zhang wrote:
> >
> > In the output file of Sander, does the Etot
> include
> > the energy of waters (I add some thousands of
> waters
> > around the protein)? If so, how can I get the
> totaly
> > energy of protein only, must I write programs to
> > analysis the topology and trajectory files of
> sander
> > myself?
>
> See the mm/pbsa section of the manual.
>
> > And What's the unit of velocity in mdvel file?
>
> See the FAQ on "units" at the Amber web site.
> >
> > some FAQ questions, sorry.
>
> We *do* encourage people to look at the FAQ before
> posting questions here.
>
> ..dac
>
> --
>
>
==================================================================
> David A. Case | e-mail:
> case_at_scripps.edu
> Dept. of Molecular Biology, TPC15 | fax:
> +1-858-784-8896
> The Scripps Research Institute | phone:
> +1-858-784-9768
> 10550 N. Torrey Pines Rd. | home page:
>
> La Jolla CA 92037 USA |
> http://www.scripps.edu/case
>
==================================================================
>

=====
Jian Zhang, Dr
Institute for Biophysics
Nanjing University
22 Hankou Road, Nanjing 210093
P. R. China
Tel: 86-25-3594476
Fax: 86-25-3595535

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