AMBER Archive (2002)

Subject: Break down energy contributions

From: Numan Oezguen (numan_at_bohr.utmb.edu)
Date: Fri Nov 29 2002 - 15:06:36 CST

Dear all,

I have a system of DNA-protein complex with a metal ion. I made a set of
MD-simulation using Amber6. Now I would like to break down all energy
contributions to metal ion. As I understand anal should be the program to do
this analysis. Up to now I didn't succeed to run anal and get the information I
want. The manual and the mails in the reflector archives are not very helpful.
Can someone please provide me a sample input file? Comments about the function
of different parts of the input file and the output would be great.

Thanks
Numan