AMBER Archive (2002)

Subject: Re: help on VMD movie

From: Stéphane Teletchéa (steletch_at_biomedicale.univ-paris5.fr)
Date: Wed Nov 13 2002 - 07:12:58 CST

Le Mercredi 13 Novembre 2002 13:44, Zhang Jian a écrit :
> Dear all,
>
> Has any one had experience on generating movies in VMD
> from AMBER7.0 parm and crd files?
>
> I have a AMBER7.0 parm file (p.wat.top) and a
> trajectory file(p.wat.traj), after loading it into
> VMD, nothing happened. So I change the AMBER7.0 parm
> file into old format using new2oldparm, then get a
> movie, it is ok.
>
> My problem is when I strip the WATER out of trajectory
> file, and combine it with the corresponding parm file
> in vacuum (p.vac.top), I got a strange movie, only the
> first frame is ok, the following frames are very
> strange. why? Does anyone have some ideas?
>
> Thank you very much!
>
> Best Regards,
> Jian Zhang
>
>

When you generate the movie, you must add the nobox option to the trajout
line (assuming you've used praj for building it).
Stef 

-- 
*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*
Teletchéa Stéphane - CNRS UMR 8601
Lab. de chimie et biochimie pharmacologiques et toxicologiques
45 rue des Saints-Peres 75270 Paris cedex 06
tel : (33) - 1 42 86 20 86 - fax : (33) - 1 42 86 83 87
mél : steletch_at_biomedicale.univ-paris5.fr
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