AMBER Archive (2002)

Subject: How to define a sphere to minimize?

From: Guillermo Mulliert Carlín (gmc_at_lcm3b.u-nancy.fr)
Date: Mon Oct 21 2002 - 01:46:57 CDT

Hello,
        I am using sander_classic in Amber 6, I would like to define a sphere
of 10 A with centre in an alpha carbon, and minimize (or make some dynamics)
only on this sphere.
        Is it possible?

        With the belly option I must define all the residues I want.

                                        Thanking you in advance

                                        Guillermo Mulliert