AMBER Archive (2002)

Subject: Reference, GB 2, Amber7

From: Jianhui Wu (wujih_at_BRI.NRC.CA)
Date: Thu Oct 17 2002 - 14:34:12 CDT

Dear Amber User,

(Sorry, I forgot to mention AMBER 7 in my first email).

I am using AMBER 7.0. I read sometime ago that the reference for GB model
2 (igb=2) is not available. Any update for this issue?

I used cutoff=16.0, igb=2. The results fit very well with all of the
experimental data. I read sometime ago that cutoff in GB is recommended to
be set as a large value. I guess this is a personal opinion instead of a
general recommendation to all amber users. Correct me if I am wrong.

Regards,

Jian Hui