AMBER Archive (2002)

Subject: Re: How to specify the counterion positions using xleap?

From: Ioana Cozmuta (ioana_at_nas.nasa.gov)
Date: Wed Oct 16 2002 - 12:45:06 CDT

Hi,

I would try to load my structure file in another software that has a good
graphical interface (GUI) like InsightII or Cerius2. There you can do
easily this interactively or by writing a script. If you do not have the
software you can send me the structure file and give me a little more info
and I can help you with that hopefully.

Ioana

On Wed, 16 Oct 2002, A.Madhumalar wrote:

> Dear amberusers,
> How one can specify the counterion positions like adding at 6.0A from
> perpendicular bisector of phosphate group using xleap in amber7?Thanks for
> any suggestions.
>
> regards,
> Madhu
>
>