AMBER Archive (2002)

Subject: Re: Some error message on Leap

From: Michael Ford (mford_at_ccrc.uga.edu)
Date: Thu Oct 10 2002 - 16:27:03 CDT

What leap has done is to change your terminal residues to the
appropriate C-terminal and N-terminal versions of these residues. I
don't think this is a problem per se. I think its more of a warning.

Michael Ford

Sichun Yang wrote:
>
> When I add protons to the PDB file by the protonate program.
> Then run tleap and give me some error messages as follows.
> Any suggestion?
>
> Marking per-residue atom chain types.
> (Residues lacking connect0/connect1 -
> these don't have chain types marked:
>
> res total affected
>
> CPRO 1
> NMET 1
> )
> (no restraints)