AMBER Archive (2002)

Subject: Re: MM-PBSA tutorial

From: Holger Gohlke (gohlke_at_scripps.edu)
Date: Thu Oct 10 2002 - 13:57:41 CDT


Hi Giulio,

> I run the 02_MMPBSA_Stability tutorial of MM_PBSA in the amber7
> distribution,
> using Delphi 4.1
> I found, on average, that the corrected reaction field energy is 10Kt
> lower
> than what reported in the ras_raf_II_wt_statistics.out.save file.
> Did anybody else noticed a difference? Has the tutorial been run with a
> different
> version of Delphi?...

I used the Delphi version as of May 98 ("Delphi II") to calculate the
values in the example directory.

Best regards

Holger

-- 
+++++++++++++++++++++++++++++++++++++++++++++
Dr. Holger Gohlke
Dept. of Molecular Biology, TPC15
The Scripps Research Institute
10550 N. Torrey Pines Rd.
La Jolla CA 92037  USA
phone: +1-858-784-9788
fax:   +1-858-784-8896
email: gohlke_at_scripps.edu
+++++++++++++++++++++++++++++++++++++++++++++