AMBER Archive (2002)

Subject: Re: AMBER6 on cluster

From: Mako Furukawa (furukawa_at_phase1a.unl.edu)
Date: Mon Oct 07 2002 - 19:43:31 CDT

Thanks Margaret,
But I still get the same error cannot find -lgm. It works just fine in
compiling other things. I think it's got to be something on my cluster.

-Mako

On Mon, 7 Oct 2002, Margaret Cheung wrote:

> Dear Mako,
>
> In the attached file, please find a Machine file with gm enabled for
> amber7. We have myrinet on linux clusters (kernel 2.4.9-31smp, gcc 2.96).
> Hope this helps.
>
> Sincerely,
> Margaret S. Cheung
> Physics Department 0319
> University of California, San Diego
> 9500 Gilman Drive,
> La Jolla, CA 92093-0319
> http://www-physics.ucsd.edu/~cheung
>
> On Mon, 7 Oct 2002, Mako Furukawa wrote:
>
> > I am trying to install AMBER6 on my cluster with myrinet (license is
> > through Univ. Neb. Medical Center) and keep getting gm library errors
> > while compiling. I have added our GM libs and includes to the MACHINE
> > files but still am not having very much luck. Do you have a MACHINE file
> > for this that might help us?
> >
> > Thank you for your time,
> >
> > Mako Furukawa
> >
> > -----------------------------------------------------------------------
> > Mako Furukawa | Systems Administrator
> > University of Nebraska-Lincoln | Research Computing Facilities
> > Miller & Paine Suite 304 | http://rcf.unl.edu
> > 121 S 13th St. | http://www.wrestlingmat.com/makohome
> > Lincoln, NE 68508 | "To err is human. To really screw up
> > Phone: (402) 472-1648 | requires a computer."
> > Cell: (402) 580-8110 | -- Bazooka Joe
> > -----------------------------------------------------------------------
> >
> >
>

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Mako Furukawa | Systems Administrator
University of Nebraska-Lincoln | Research Computing Facilities
Miller & Paine Suite 304 | http://rcf.unl.edu
121 S 13th St. | http://www.wrestlingmat.com/makohome
Lincoln, NE 68508 | "To err is human. To really screw up
Phone: (402) 472-1648 | requires a computer."
Cell: (402) 580-8110 | -- Bazooka Joe
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