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AMBER Archive (2002)Subject: geometry optimization/turning off Elec and Vdw terms
From: Tom Bishop (bishop_at_tulane.edu)
Dear Amber,
I have a system with some atom centers that are simply put "way too
Is there a way to turn off the nonbonded (vdw and elec) interactions and
Setting SCNB, SCEE and DIELC >> 1 takes care of electrostatics and the
Setting CUT << 1.0 should take care of vdw but gets me into trouble b/c
I'm sure there are other tricks I could play with parameters, but the
Can you help?
NOTE: Geometry optimization is a cute trick to generate coordinates for
In short it's a cute trick to place a limited number of missing atoms
Thanks in advance.
-- ----------------------------------------- Thomas C. Bishop, Ph.D. Joint Faculty Appointments Program Professor Center for Bioenvironmental Research ----------------------------------------- Tulane University Office ----------------------------------------- Dept. of Environmental Health Sciences(SL-29) School of Public Health & Trop. Medicine 1430 Tulane Avenue New Orleans, LA 70112 Phone: 504-988-6203 Fax: 504-585-6428 bishop_at_tulane.edu ----------------------------------------- Xavier University Office ----------------------------------------- Division of Basic Pharmaceutical Sciences College of Pharmacy 7325 Palmetto Street New Orleans, LA 70125 Phone: 504-485-5106 Fax: 504-485-7954 tbishop_at_xula.edu -----------------------------------------
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