AMBER Archive (2002)

Subject: Re: ambpdb?

From: Lepsa (lepsik_at_marilyn.uochb.cas.cz)
Date: Wed Sep 25 2002 - 03:29:25 CDT

Dear Arvid,
it's p.

Martin
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Martin Lepsik, PhD student            Phone:  +420/2/20183-540, Fax:
+420/2/20183-292
Dept. of Theor Chem & Center for Complex molecular Systems and Biomolecules
Institute of Organic Chemistry and Biochemistry (IOCB)
Flemingovo nam 2,
Czech Academy of Sciences,
166 10, Prague 6,
Czech Rep.
URL: www.uochb.cas.cz/~teochem
----- Original Message -----
From: "Arvid Soederhaell" <arvid_at_fmp-berlin.de>
To: "amber" <amber_at_heimdal.compchem.ucsf.edu>
Sent: Wednesday, September 25, 2002 9:38 AM
Subject: ambpdb?

> Hi all
>
> I know that there is a flag to use with the ambpdb-command that you can
> use if the toplogy file has a different name than "prmtop", but I can't
> find it again... Can somebody remind me?
>
> I think the syntax is the following, correct me if i'm wrong:
>
> ambpdb -(missing-flag) mytopology.top < mystructure.crd > mystructure.pdb
>
>
> Arvid