AMBER Archive (2002)

Subject: amber question

From: yao yong (yao_yongcn_at_yahoo.com.cn)
Date: Mon Sep 16 2002 - 06:03:16 CDT

Dear Sir

I am writing this letter to to ask you a question of
the using of amber5. Since I am using the precedure of
creating link, edit and parm files, I meet a
difficulty in writing the sequence in the link.in
file. The first residue of the protein begins with a
negative number
Thr Glu Phe Lys Ala Ser ...
-5 -4 -3 -2 -1 1 ...

I wrote it as follws:

...
P 1 0 1 3 1
THR GLU PHE LYS ALA
GLY 2SER ALA LYS LYS
...

but it failed
What is the fomat of writing such a sequence?

Thank you for your help in advance.

Yong

***************************
Yao Yong
State Key Laboratory of Coordination Chemistry
Department of Chemistry, Nanjing University
Nanjing 210093, P. R. China
Fax: 86-25-3314502
Email:yao_yongcn_at_yahoo.com.cn
****************************

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