AMBER Archive (2002)

Subject: Re: QUICK HELP! Parameters for neutral amino acids (fwd)

From: David A. Case (case_at_scripps.edu)
Date: Mon Aug 26 2002 - 20:32:50 CDT


On Mon, Aug 26, 2002, amber_at_heimdal.compchem.ucsf.edu wrote:
>
>
> Anyone knows which parameters for partial charges I have to use to simulate:
>
> Aspartic acid
> Serine
> in neutral configuration?

The neutral forms of these residues are called ASH and SER in the Amber
library files. But maybe this is not the question you really wanted to ask?

..good luck...dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ==================================================================