AMBER Archive (2002)

Subject: Carnal stream problem

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Wed Aug 14 2002 - 09:45:04 CDT

Dear fellow users,
    I am trying to use Carnal for an RMS fit.
    I am specifying the following

FILES_IN
   PARM p1 /net/vrlab03/MD_archive/RNA/without_err/rna_ion_wat.top;
   STREAM s1 rna_ion_wat_mdeq0.pdb rna_ion_wat_min0.pdb.....;
     
   STATIC ref_set rna_ion_wat_0.pdb;
.....
When Carnal is reading the stream I get the follwing error:
    FILES_IN
> PARM p1 /net/vrlab03/MD_archive/RNA/without_err/rna_ion_wat.top;
Reading parm file (/net/vrlab03/MD_archive/RNA/without_err/rna_ion_wat.top)
parm: opening /net/vrlab03/MD_archive/RNA/without_err/rna_ion_wat.top
/net/vrlab03/MD_archive/RNA/without_err/rna_ion_wat.top title:

> STREAM s1 rna_ion_wat_mdeq0.pdb
Using default parm
(/net/vrlab03/MD_archive/RNA/without_err/rna_ion_wat.top) for STREAM s1
 (box will be read from stream)
> rna_ion_wat_min0.pdb;
stream: opening rna_ion_wat_min0.pdb
Segmentation fault

Has anyone experienced this problem before??? Does anyone no what might
happen?
Thanks a lot for help
Best regards,
vlad 

-- 
Vlad Cojocaru 
Max Planck Institut for Biophysical Chemistry 
Deparment: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de