AMBER Archive (2002)

Subject: GB in Amber7

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Hi,

I'm planning to do simulation of a protein-DNA complex using the continuum solvent model. Which of the four methods available in Amber7 (igb) will be the best for this GB calculaton? Could anybody suggest the equilibration procedure for the system containing about 6000 atoms?

Thanks & regards
Jithesh
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Jithesh P.V.
Bioinformatics Applications
C-DAC, Pune, India - 411007

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• Next message: Michael Petersen: "problem reading rstrnt file with pgf77 compiled sander"
• Previous message: Giulio Rastelli: "dihedral parameter for conjugated double bonds in GAFF"
• Next in thread: David A. Case: "Re: GB in Amber7"
• Reply: David A. Case: "Re: GB in Amber7"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]