AMBER Archive (2002)

Subject: Re: creating a solvent box

From: Laurent Chiche (chiche_at_cbs.cnrs.fr)
Date: Thu Jul 25 2002 - 09:46:47 CDT

Bimo,
You might search the AMBER manual for the Leap documentation and
commands beginning with "Solvat"
You could also have a look at the DNA tutorial in the tutorial
directory of the AMBER distribution
tutorial/polyA-polyT/start_up.html

Laurent

Bimo Ario Tejo wrote:

> Hi Amber users,
>
> Does anyone know how to create a solvent box with Amber? Could you please inform me how to put all the molecule into a box, how to equilibrate it, how to parametrise it, etc...
>
> Many thanks,
> Bimo
>