AMBER Archive (2002)

Subject: Question

From: TL Poulos (poulos_at_uci.edu)
Date: Wed Jun 05 2002 - 10:49:10 CDT

I am a relatively new amber user and want to add some new forcefield
paameters for specialized groups and cofactors in proteins. It would help
to know the format of the forcefield files like parm94.dat. Most of it is
obvious but some is not. This does not seem to be part of the
documentation. One other note. Protonate cannot handle CYS residues
in version 6. I have worked around this and it is not a big
problem. Thanks.

TL Poulos
-------------------------------------------------------------
Thomas L. Poulos poulos_at_uci.edu
Chancellor's Professor
Dept. of Molecular Biology&Biochemistry office: (949) 824-7020
University of California lab: (949) 824-4322
Irvine, CA 92697-3900 USA fax: (949) 824-3280
http://phase.bio.uci.edu/~poulos/lab/research.html