AMBER Archive (2002)

Subject: Re: Amber7 nmode

From: David Case (case_at_scripps.edu)
Date: Wed May 01 2002 - 12:55:07 CDT

On Wed, May 01, 2002, Sue Heavner wrote:

I then went to the test directory , ran make
test.nmode, and recieved the following messages:

>
> cd nmode; ./Run.ala-dipeptide
>
> NMODE: find normal modes
> diffing vibs.out.save with vibs.out
> PASSED

...

> Then I went to the test/nmode directory but no files were created. When
> make test.<program-name> is run for other modules of amber output is found
> in the corresponding directories. Thanks in advance for any help on this
> subject.

All of the amber 7 tests *should* clean up after themselves when tests pass.
That is, if vibs.out.save is the same as vibs.out, the latter is removed;
hence it will look like no files were created. You can look at the *.save
files, however, to see output examples.

I hope others will have suggestions about the mm_pbsa problem.

...good luck...dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
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