AMBER Archive (2002)

Subject: Minimization of pentane holding a plane of carbon atoms

From: Hungie Hungie (hungie01_at_hotmail.com)
Date: Wed Apr 17 2002 - 12:32:28 CDT

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Dear Amber's users,

I would like to run minimization of pentane (CH3-CH2-CH2-CH2-CH3) using
amber6. My starting structure has a plane of C-C-C-C-C in XY-plane. I would
like to keep the plane of 5 carbon atoms in the same plane, but C-C bond can
change. Could you please suggest me? It would me nice if you can give me an
example file.

Thank you very much in advance.

Hungie

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