AMBER Archive (2002)

Subject: parameter estimation

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Thu Mar 07 2002 - 12:32:25 CST

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I have a new Rna residue that I have created using RG unit and modifying
it according to my needs by assigning the atom types for the new atoms
created. If I want to create the parm and coord files leap is telling me
that it could not find several bond, angle and torsion parameters.
  Is it correct to assign this parameters with the values obtained by
measuring them with measureGeom command? 

-- 
Vlad Cojocaru 
Max Planck Institut for Biophysical Chemistry 
Deparment: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de  
Home Address: Gutenbergstrasse 26/8  
              37075 Goettingen, Germany 
Home tel. number: ++49-551-9963204
Mobile: ++49-179-6851586
alternative email: johhnny_ar_at_yahoo.com

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