AMBER Archive (2002)

Subject: xleap and carbohydrates and stuff

From: Amesh Patel (paxabp_at_nottingham.ac.uk)
Date: Wed Feb 27 2002 - 08:43:23 CST

hello computer people.
i am having the largest problems ever with creation of sensible prmtop/inpcrd files for the carbohydrate - sleX. i have used Homans carbohydrate parameters and with both parm91X.dat and parm94.dat, and while xleap produces prmtop/inpcrd files without any fuss, when i try to make a pdb file using the ambpdb function, i get the following message:

fmt: read unexpected character
apparent state: unit 10 named sialyl.prmtop
last format: (5E16.8)
Unit 10 is a sequential formatted external file
*** Execution Terminated (115) ***

- i just don't get it. do you??
thanks in advance.
amesh patel