AMBER Archive (2002)

Subject: flying monomers...

From: Margaret Cheung (cheung_at_physics.ucsd.edu)
Date: Fri Feb 15 2002 - 17:58:39 CST

Dear amber users and developers,

I'm try to simulate two chains in a non-periodic box in vacuo.
However, at high temperature they flew apart rapidly after they
dissociate. In the Hamiltonian, however, there is no long-range repulsion
terms. I was wondering if there's any flag that can minimize this problem.
Thank you very much.

Sincerely,
Margaret S. Cheung
Biophysics Program
Physics Department 0319
University of California, San Diego
9500 Gilman Drive,
La Jolla, CA 92093-0319
http://www-physics.ucsd.edu/~cheung