AMBER Archive (2002)

Subject: Re: Amino acid unit "NHE" problem ?

From: David Case (case_at_scripps.edu)
Date: Thu Jan 17 2002 - 10:37:55 CST

On Thu, Jan 17, 2002, S. Jang wrote:

> I tried to construct peptide with leap with AMBER6. I want to use acetyl
> beginning group(ACE) and amine ending group(NHE). According to the
> manual "NHE" should work fine.
> But it seems leap doesn't recognize "NHE" . Here is the message.

Do the following:

tleap -s

loadoff all_aminoct91.lib
saveOff NHE NHE.lib
quit

Then you can load this NHE.lib file in second tleap run and use it
to construct peptides, etc.

...good luck...dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
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