AMBER Archive (2001) - May 2001 By Thread

Starting: Tue May 01 2001 - 08:58:13 CDT
Ending: Thu May 31 2001 - 21:06:20 CDT

• AMBER parameters Andreas Svrcek-Seiler (Tue May 01 2001 - 08:58:13 CDT)
• Wallclock on Intel/Linux sander Jarrod Smith (Tue May 01 2001 - 14:48:36 CDT)
• ANAL (Amber6.0) Aldo Jongejan (Wed May 02 2001 - 08:01:31 CDT)
• Important Address change jim caldwell (Wed May 02 2001 - 13:42:04 CDT)
  • question about mm-pbsa Zhangxd (Wed May 02 2001 - 15:02:50 CDT)
• Why does water leak!? Sanjeev B.S. (Thu May 03 2001 - 04:07:51 CDT)
• sander6/Linux compiled with pgf77 + mpipro Jarrod Smith (Thu May 03 2001 - 10:11:16 CDT)
  • Re: sander6/Linux compiled with pgf77 + mpipro Jarrod Smith (Thu May 03 2001 - 14:41:06 CDT)
• Re: addions in leap Bill Ross (Fri May 04 2001 - 09:23:44 CDT)
• Ewalb bomb on SP3 Sanjeev B.S. (Sat May 05 2001 - 14:38:23 CDT)
  • question about mm-pbsa Zhangxd (Mon May 07 2001 - 07:32:26 CDT)
• peek_ewald_inpcrd Andrew Aird (Mon May 07 2001 - 11:48:59 CDT)
  • Re: peek_ewald_inpcrd darden (Mon May 07 2001 - 16:01:08 CDT)
• parameters Adrian E. Roitberg (Mon May 07 2001 - 13:00:55 CDT)
• sander_classic: bond energy problem Miyashita, Osamu (Mon May 07 2001 - 16:28:03 CDT)
• parameters forms Yuguang Mu (Tue May 08 2001 - 03:13:32 CDT)
• Re: topology description Andreas Svrcek-Seiler (Tue May 08 2001 - 10:18:12 CDT)
  • Re: topology description Bill Ross (Wed May 09 2001 - 17:27:01 CDT)
• escaping atoms.... Amesh Patel (Wed May 09 2001 - 09:36:30 CDT)
  • DNA strand flying Stephane (Thu May 10 2001 - 10:48:17 CDT)
• Resp liz (Wed May 09 2001 - 14:14:32 CDT)
• Re: escaping atoms.... Bill Ross (Wed May 09 2001 - 17:34:27 CDT)
• Diffusion constant Yanni Wang (Thu May 10 2001 - 04:14:34 CDT)
• Minimization inputs in AMBER6!! A.Madhumalar (Thu May 10 2001 - 12:09:27 CDT)
• sorry for the virus. Guo, Jianxin (Thu May 10 2001 - 13:52:55 CDT)
• ptraj Vector command Troy Bothwell (Thu May 10 2001 - 17:36:04 CDT)
• tree names in group spec. Artem Mamonov (Thu May 10 2001 - 18:49:02 CDT)
• Re: tree names in group spec. Bill Ross (Thu May 10 2001 - 20:37:01 CDT)
• carnal error with crd files stripped of waters Michael Cooney (Fri May 11 2001 - 15:52:47 CDT)
  • Re: carnal error with crd files stripped of waters samantha hughes (Mon May 14 2001 - 03:20:17 CDT)
• Re: Residue wise RMSD using carnal Bill Ross (Sun May 13 2001 - 12:28:05 CDT)
• Amber 6.0 on LINUX with absoft Soonmin Jang (Mon May 14 2001 - 02:43:16 CDT)
  • Re: Amber 6.0 on LINUX with absoft Jarrod Smith (Mon May 14 2001 - 09:22:42 CDT)
    • the program and references Zhangxd (Tue May 15 2001 - 10:33:01 CDT)
• phosphotyrosine Fabrizio Giordanetto (Tue May 15 2001 - 10:34:51 CDT)
• AMBER enquiry Marjoribanks, Andrew G (Tue May 15 2001 - 12:21:03 CDT)
• RMSD calculation arubin_at_unmc.edu (Tue May 15 2001 - 14:43:46 CDT)
• Re: RMSD calculation Bill Ross (Tue May 15 2001 - 16:49:39 CDT)
  • Re: RMSD calculation Carlos Simmerling (Tue May 15 2001 - 18:13:47 CDT)
• ewald bomb Martin Crnugelj (Wed May 16 2001 - 02:43:13 CDT)
• average structure Krishna Bisetty (Wed May 16 2001 - 05:33:41 CDT)
• (no subject) Rino Ragno (Wed May 16 2001 - 06:47:15 CDT)
  • Re: CCL:Date: Wed, 16 May 2001 13:47:15 +0200 Bill Ross (Wed May 16 2001 - 14:59:11 CDT)
• PSC BIOMEDICAL WORKSHOPS 2001 Troy Wymore (Wed May 16 2001 - 12:27:50 CDT)
• box of water Marcela Madrid (Wed May 16 2001 - 17:04:01 CDT)
• Re: Residence time Nada Spackova (Thu May 17 2001 - 08:24:07 CDT)
• Query Monica (Sat May 19 2001 - 07:09:24 CDT)
• GDP/GTP Nathalie Duclert (Mon May 21 2001 - 08:02:12 CDT)
• matrix diagonalizing subroutines Haitao Dong (Mon May 21 2001 - 13:15:16 CDT)
• matrix diagonalizing subroutines Haitao Dong (Mon May 21 2001 - 13:45:03 CDT)
• f2c.h Osmar Norberto de Souza (Mon May 21 2001 - 15:20:38 CDT)
• Re: Ewald error estimation darden (Mon May 21 2001 - 15:58:17 CDT)
• Re: f2c.h Bill Ross (Mon May 21 2001 - 17:10:56 CDT)
• CUT in AMBER6 arubin_at_unmc.edu (Mon May 21 2001 - 17:53:41 CDT)
• AMBER compilation woes Elizabeth K. White (Tue May 22 2001 - 00:12:04 CDT)
• Re: AMBER compilation woes Bill Ross (Tue May 22 2001 - 02:01:52 CDT)
• compilation on linux6 Monica (Wed May 23 2001 - 07:35:11 CDT)
  • Re: compilation on linux6 Nicolas Grima (Wed May 23 2001 - 07:17:56 CDT)
• Amber, VMD and visualization Hermann von Grafenstein (Thu May 24 2001 - 19:32:44 CDT)
  • Re: Amber, VMD and visualization Warren DeLano (Thu May 24 2001 - 20:30:00 CDT)
  • Re: Amber, VMD and visualization David Konerding (Thu May 24 2001 - 21:03:13 CDT)
  • Re: Amber, VMD and visualization samantha hughes (Fri May 25 2001 - 00:34:41 CDT)
• Peter Kollman jim caldwell (Fri May 25 2001 - 13:10:55 CDT)
  • titratable amino acids and counter ions Christian Pilger (Mon May 28 2001 - 06:49:36 CDT)
    • protein ionization Victor Anisimov (Tue May 29 2001 - 05:07:59 CDT)
• Charges for methylated residue Jithesh P.V. (Mon May 28 2001 - 23:45:46 CDT)
• parameters for neutral amino acids Ngai Ling Ida Ma (Tue May 29 2001 - 00:42:45 CDT)
• problem in xleap Monica (Wed May 30 2001 - 06:15:00 CDT)
• summary: titratable amino acids and counter ions Christian Pilger (Wed May 30 2001 - 07:23:30 CDT)
  • Re: titratable amino acids and counter ions Michal Otyepka (Wed May 30 2001 - 06:50:10 CDT)
• problem in xleap (fwd) Monica (Wed May 30 2001 - 07:35:06 CDT)
• Re: problem in xleap Bill Ross (Wed May 30 2001 - 11:50:17 CDT)
• Re: add counterions Bill Ross (Wed May 30 2001 - 11:58:53 CDT)
• Peter Kollman memorial jim caldwell (Wed May 30 2001 - 18:25:17 CDT)
• (no subject) Sarah Tschampel (Thu May 31 2001 - 11:01:09 CDT)
• make test.all crashes in AMBER Elizabeth K. White (Thu May 31 2001 - 16:48:12 CDT)
  • Re: make test.all crashes in AMBER jim caldwell (Thu May 31 2001 - 17:29:52 CDT)
• machine/OS on which make test.all crashes in AMBER Elizabeth K. White (Thu May 31 2001 - 19:51:22 CDT)
• sander 6 warming up Shixiang Yan (Thu May 31 2001 - 21:06:20 CDT)

Last message date: Sun Dec 30 2001 - 21:24:17 CST
Archived on: Thu May 05 2005 - 14:17:16 CDT