AMBER Archive (2001)

Subject: RE: software to build molecules

From: DeLano, Warren (warren_at_sunesis.com)
Date: Tue Dec 11 2001 - 11:02:44 CST

Marcela,

As of version 0.73 (released yesterday), you build arbitrary molecules
on the fly in just a few seconds using PyMOL . The interface is
simple: you pick the atom where you want to add a fragment and then use
a keystroke or menu selection to attach it.

Both normal peptides and non-standard organic compounds are supported.

PyMOL is free, open-source, modifiable, and redistributable.

Cheers,
warren 

--
mailto:warren_at_sunesis.com
Warren L. DeLano, Ph.D.
Informatics Manager
Sunesis Pharmaceuticals, Inc.
341 Oyster Point Blvd.
S. San Francisco, CA 94080
(650)-266-3606 fax: (650)-266-3501

> -----Original Message-----
> From: Marcela Madrid [mailto:mmadrid_at_psc.edu]
> Sent: Tuesday, December 11, 2001 8:18 AM
> To: amber_at_heimdal.compchem.ucsf.edu
> Subject: software to build molecules
> 
> 
> Hi
> Sorry this is not an amber question. I was wondering
> if someone can recommend a free (or almost free)
> software to build non-standard molecules.
> thanks, Marcela
> 
>