AMBER Archive (2001)

Subject: Segmentation fault (core dumped)

From: Rozita Dara (rdara_at_uoguelph.ca)
Date: Tue Sep 25 2001 - 21:31:30 CDT

Hello,

I'm runing a minimization problem (in water). I want to add Ions (Na+ and
Cl-). The box of water for my simulation is:

SolvateBOX ... 12.0

I've following problems:

1. Why I can't add both the Ions (Na+ and Cl-). It accepts one, and for
the second one is gaves me "Segmentation fault (core dumped)" error when
running tleap?

2. My second problem is with running ambpdb. Even with 10.0 size for
water, when I run ambpdb to change my output file to pdb file it gaves me
the same error "Segmentation fault (core dumped)". I don't know if
something is wrong with the memory or my files.

Any input is greatly appreciated.

Regards, Rozita