AMBER Archive (2001)

Subject: movie for subset of atoms

From: Anton B. Guliaev (anton_at_vostok.lbl.gov)
Date: Thu Aug 30 2001 - 15:42:14 CDT

Dear Amber Users,

I would like to create a movie based on MD trajectory for only a
subset of atoms. Let say RES 1-5 and a couple of solvent molecules
out of system with 240 residues in a water box. The programs i used
so far let me do it only if I recreate the new topology (or .parm in case
of VMD) file and load it together with the new (modified) coordinate
stream.
Is there any way to do it without creating a new .top file?

Thanks a lot,

Anton
        *******************************
        * Anton B. Guliaev, Ph.D *
        * Life Sciences Division *
      _ * LBNL, Berkeley CA 94720 * _
     / )* abguliaev_at_lbl.gov *( \
    / / * F:(510)-486-6488 * \ \
  _( (_ * T: 510-486-5773 * ) )_
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