AMBER Archive (2001)

Subject: question

From: Jie Guo (jg611_at_SCIRES.ACF.nyu.edu)
Date: Thu Aug 30 2001 - 12:58:37 CDT

Hi,

We would like to use a restraint on the Watson-Crick base pairs
in a DNA energy minimization/molecular dynamics simulation. What is
the best way to do this? We would like to experiment with different
weights on the restraints in the range of 5-25 kcal/mol.

Thanks very much for the help.

Jie