AMBER Archive (2001)

Subject: Creating capped peptides with AMBER

From: John Finke (jfinke_at_chem.ucsd.edu)
Date: Tue Jul 10 2001 - 19:41:28 CDT

I'm going to be running a simulation of a peptide which is "capped" at
both ends (carboxulated at the N-terminus and amidated at the C terminus).
I don't have a crystal structure for this peptide and am making it from
scratch using Link.

I can make the peptide. What is a good way to put in the capped ends?

John Finke
jfinke_at_ucsd.edu