AMBER Archive (2001)

Subject: Re: How tleap does not add missing H atoms?

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Mon Mar 26 2001 - 11:54:34 CST

        When I used tleap with command 'aa = loadpdb dna.pdb', it automatically
        added missing H atoms which I would not like.
        
        Could anyone suggest me how to setup tleap to does NOT add missing
        H atoms?
        
You would either have to define residues without the H's
and load them instead of the standard ones (using a custom
leaprc), or modify the code to create a new option (like
'loadpdbnoadd').

Bill Ross