AMBER Archive (2001)

Subject: Re: carnal problem

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Fri Mar 16 2001 - 16:09:56 CST

        I'm studyin a protein-peptide complex. The protein is 101 aa long
        (numbered 1 to 101), the peptide is 8 aa long (numbered 102 to 109). I'm
        trying to generate a list of residues within 10. Angstroms from the
        peptide, by using the following carnal input:
        
        OUTPUT
          TABLE t1 id%residues;

        (2) What do I have to specify in the TABLE line in the OUTPUT section?

CUTRES output goes to stdout (or -o outfile, if specified).
TABLEs are tabular things unsuited for amber GROUP format.

        (1) CUTRES selects only the peptide residues
        
When it runs, you will see what it selects.

Bill Ross