AMBER Archive (2001)

Subject: Re: Trouble compiling amber on an Indy, R4400, running IRIX 6.5.10

From: Gota Kawai (gkawai_at_ic.it-chiba.ac.jp)
Date: Tue Jan 23 2001 - 17:36:02 CST

****************** Virus Warning Message (on smtp-in-2.llnl.gov)

Found virus TROJ_NAVIDAD.E in file Emanuel.exe
The file mqueue/virus/virEZBfwaGqy is moved to the configured virus directory.

*********************************************************

Margaret Doll wrote:
>
> Dear Sirs,
>
> I emailed one of your technical groups last week concerning a
> problem I am having in compiling amber 6.0 on our Indy. The compilation
> bombs out with
>
> f77 -mips2 -o sander_classic sander.o cshf.o ...
> ...
> ...
> ../lib/malloc.o /usr/local/amber6/src/Machines/sgi/sys.a -lblas
> -lcompib.sgimath -lfastm
> ld: FATAL 12: Expecting o32 objects: ../lib/malloc.o is n32.
> *** Error code 1 (bu21)
> *** Error code 1 (bu21).
>
> We had tried to get this software running last semester on the
Indy
> when it was running 5.3., but we were unsuccessful. We invested in a new
> 9 Gb system disk, and paid for an upgrade in the system software. Please
> help us get you software running on our system.
>
> Margaret Doll (401-863-1982)
> margaret_doll_at_brown.edu
> (401) 745-7306 (beeper)

Hi Margaret,

I'm attaching a text file below with the suggestions I had made last
week. What were the results? Let me know if I can help further.

Nathalie 

--
--------------------------------------------------------------------------
Nathalie Godbout, Ph.D.       SGI
godbout_at_boston.sgi.com        Chemistry and Biology Applications Group
(978)567-2147                 One Cabot Road, Hudson
(978)562-4755 fax             MA 01749, USA
--------------------------------------------------------------------------

******************  Virus Warning Message (on smtp-in-2.llnl.gov)

Emanuel.exe is removed from here because it contains a virus.

*********************************************************From ???@??? Mon Jan 29 10:20:30 2001
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From: "Gota Kawai" <gkawai_at_ic.it-chiba.ac.jp>
To: "godbout_at_boston.sgi.com" <Margaret_Doll_at_brown.edu>
Cc: <amber_at_cgl.ucsf.edu>, <amber-request_at_cgl.ucsf.edu>, <mutnick_at_cgl.ucsf.edu>,
        <William_Suggs_at_brown.edu>
Subject: Re: Trouble compiling amber on an Indy, R4400, running IRIX 6.5.10
Date: Wed, 24 Jan 2001 08:42:17 +0900
Message-ID: <NDBBLKEKMDGGAGGCDHCLGEBDCLAA.gkawai_at_ic.it-chiba.ac.jp>
MIME-Version: 1.0
Content-Type: text/plain
X-Priority: 3 (Normal)
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Importance: Normal
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X-UIDL: d7a919339b2ed0281093bb37655ee912

******************  Virus Warning Message (on smtp-in-1.llnl.gov)

Found virus TROJ_NAVIDAD.E in file Emanuel.exe
The file mqueue/virus/virVPAe7a4bO is moved to the configured virus directory.

*********************************************************

Margaret Doll wrote:
>
> Dear Sirs,
>
>         I emailed one of your technical groups last week concerning a
> problem I am having in compiling amber 6.0 on our Indy.    The compilation
> bombs out with
>
>         f77 -mips2 -o sander_classic sander.o cshf.o ...
>         ...
>         ...
>         ../lib/malloc.o /usr/local/amber6/src/Machines/sgi/sys.a -lblas
> -lcompib.sgimath -lfastm
>         ld: FATAL 12: Expecting o32 objects:  ../lib/malloc.o is n32.
>         *** Error code 1 (bu21)
>         *** Error code 1 (bu21).
>
>         We had tried to get this software running last semester on the
Indy
> when it was running 5.3., but we were unsuccessful.   We invested in a new
> 9 Gb system disk, and paid for an upgrade in the system software.   Please
> help us get you software running on our system.
>
>                                         Margaret Doll  (401-863-1982)
>                                         margaret_doll_at_brown.edu
>                                         (401) 745-7306 (beeper)

Hi Margaret,

I'm attaching a text file below with the suggestions I had made last
week. What were the results? Let me know if I can help further.

Nathalie
--
--------------------------------------------------------------------------
Nathalie Godbout, Ph.D.       SGI
godbout_at_boston.sgi.com        Chemistry and Biology Applications Group
(978)567-2147                 One Cabot Road, Hudson
(978)562-4755 fax             MA 01749, USA
--------------------------------------------------------------------------

******************  Virus Warning Message (on smtp-in-1.llnl.gov)

Emanuel.exe is removed from here because it contains a virus.

*********************************************************From ???@??? Mon Jan 29 10:20:30 2001
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Date: Tue, 23 Jan 2001 15:47:38 -0800 (PST)
From: jim caldwell <caldwell_at_heimdal.compchem.ucsf.edu>
To: amber_at_cgl.ucsf.edu
Subject: Mail from:Gota Kawai <gkawai_at_ic.it-chiba.ac.jp>  contains a virus
Message-ID: <Pine.OSF.3.96.1010123154613.31903B-100000_at_heimdal.compchem.ucsf.edu>
MIME-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII
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Hi Everyone,

We have been notified that the mail sent to amber_at_cgl.ucsf.edu
from Gota Kawai <gkawai_at_ic.it-chiba.ac.jp>

contains a MSWORD virus.  Just delete the mail message without
trying to read/open it.

jim

----------------------------------------------------------------------------
James W. Caldwell                         (voice) 415-476-8603
Department of Pharmaceutical Chemistry    (fax)   415-502-1411  
Mail Stop 0446                            (email) caldwell_at_heimdal.ucsf.edu
513 Parnassus Avenue                      (video) farbauti.compchem.ucsf.edu 
University of California                          (netmeeting) 
San Francisco, CA 94143-0446               
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