AMBER Archive (2001)

Subject: Octahedral Box?

From: Troy Bothwell (tbothwe1_at_bigred.unl.edu)
Date: Fri Jan 12 2001 - 11:34:10 CST

Hello All,

Is an octahedral box recommended when doing simulations on DNA oligos which
are 10-20 base pairs? There is the potential for self diffusion of the DNA
so that the long axis of the DNA is along the short axis of the box. Thanks
for your comments.

Troy