AMBER Archive (2001)

Subject: Re: nucgen

From: David Konerding (dek_at_cgl.ucsf.edu)
Date: Mon Jan 08 2001 - 13:54:43 CST

"Troy Bothwell" writes:
>Hello all,
>
>I am about ready to pull my hair out with this nucgen input file. Past
>experience with sander tells me that I have a simple formating problem, but
>I cannot locate the problem. the input and output files are below.
>
>-----------------------------------------------------------------
> NUC 1
> D
>C5 G C T A T A A A A G G G C3
>
> NUC 2
> D
>G5 C C C T T T T A T A G C G3
>
>END
>$ABDNA

You have extra spaces between your residue names

Yours:
C5 G C T A T A A A A G G G C3
Correct:
C5 G C T A T A A A A G G G C3

Dave