AMBER Archive (2000)

Subject: perturbed topology file

From: Terreux Raphael (terreux_at_taloa.unice.fr)
Date: Wed Mar 22 2000 - 18:26:07 CST

Dear amber users,

I am trying to measurated the free energy variation during a interaction
process of two RNA loop. To use Gibbs module, i must have a perturbed
topology files, but in my cases there are no atoms mutation. I read in
the manual (Amber 5.0 vol 1 p 225) that is possible to create a pertubed
topology files with no perturbed atoms. It is not very well define how
to do this the job. May someone help me ? thank in advance for your help

Regards

Raphael terreux 

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TERREUX Raphael

LARTIC
Universite de Nice-Sophia Antipolis,
Parc Valrose, F 06108, Cedex 2,
NICE, FRANCE

TEL : +33 (0)4 92 07 61 26
FAX : +33 (0)4 92 07 61 25
e-mail : terreux_at_chiminfo.unice.fr
         terreux_at_unice.fr
web    : http://chiminfo11.unice.fr/~terreux/index.htm
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