AMBER Archive (2000)

Subject: Re: IBELLY

From: Jarrod Smith (jarrod.smith_at_vanderbilt.edu)
Date: Thu Mar 09 2000 - 12:41:53 CST


Perhaps NTR is what I am thinking of. My apologies.

Jarrod Smith jsmith_at_structbio.vanderbilt.edu
Structural Biology Center Tel: 615-322-1739
Vanderbilt University Fax: 615-936-2211

-----Original Message-----
From: Marios Philippopoulos <mphilip_at_sickkids.on.ca>
To: Jarrod Smith <jarrod.smith_at_vanderbilt.edu>; amber_at_cgl.ucsf.edu
<amber_at_cgl.ucsf.edu>
Date: Thursday, March 09, 2000 12:18 PM
Subject: Re: IBELLY

>If that's the case, I don't see the difference with NTR.
>
>Jarrod Smith wrote:
>
>> IBELLY doesn't "freeze" the atoms. I believe what it does is apply a
>> harmonic constraint to each coordinate. If you watch a trajectory, you
will
>> see the constrained atoms moving with high-frequency vibrations about
their
>> original coordinates.