AMBER Archive (2000)

Subject: About periodic box & modification of sander(5.0)

From: B (watanabe-katsuhiro_at_hitachi-ul.co.jp)
Date: Wed Jan 19 2000 - 18:29:04 CST


dear all amber users

does anyone know about this question ?
my question is...

when i did mdrun in high temperature periodic box to unfold protein, i
found that
   a part of a protein had been out of the box.
   any influence for protein system from this phenomenon?

thank you in advance.

katsuhiro watanabe
hitachi-ulsi systems.co.ltd