AMBER Archive (1999)

Subject: viewing md trajectory of a big system

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Dear AMBER users,

i made some (rna + Mg2+ + water MD) simulation.
the system is about 25.000 atoms and 6.000 residues. To read the
trajectory i have try :
- recompile pdbgen with a greater MAXATOM and MAXRES and use interface
(based on the script pdbmany in /interface/example), the pdb generated
isn't valide
- use moilview ( too small for the system)

does anybody uses a software wich can directely read mdcrd of a large
system ?

regards.

raphael Terreux

--
-------------------------------------------------------
TERREUX Raphael
LARTIC
Universite de Nice-Sophia Antipolis,
Parc Valrose, F 06108, Cedex 2,
NICE, FRANCE
TEL : +33 (0)4 92 07 61 26
TEL : +33 (0)4 92 07 60 60 poste 27 10
FAX : +33 (0)4 92 07 61 25
e-mail : terreux_at_chiminfo.unice.fr
         terreux_at_unice.fr
web    : http://chiminfo11.unice.fr/~terreux/index.htm
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