AMBER Archive (1999)

Subject: Re: RNA

From: Sebastien Lemieux (lemieuxs_at_IRO.UMontreal.CA)
Date: Wed Jul 21 1999 - 12:47:25 CDT

Hi,

> How is the easiest way to create an irregular RNA
> molecule (with leap ?) and to use the coordinates
> in the PDB file as starting coordinates ?

I am a little biased in that context, but I would strongly suggest that
you give a try at MC-SYM.

> Maybe there is an example presented on a web-site
> elsewhere ?

You may find some information on the web site of our lab:

   http://www-lbit.iro.umontreal.ca/

Hope this helped...

------------------ Sebastien Lemieux, Microbio/CS -------------------
             Breaking the Second Half of the Genetic Code

  cggacacaca aaaagaaaga agaattttta ggatcttttg tgtgcgaata actatgagga