AMBER Archive (1999)

Subject: crown tutorial

From: ross_at_cgl.ucsf.EDU
Date: Sat May 29 1999 - 18:45:06 CDT

I have upgraded my crown ether tutorial under

        http://www.amber.ucsf.edu/amber/tutorial/index.html

adding much theoretical discussion. The overall structure is now:

  - building the model
  - normal modes analysis (old amber demo)
  - dynamics
    - equilibration
    - energy conservation
    - equipartition
  - perturbation of complexed ion
    - hysteresis
  - trajectory analysis

Bill Ross