AMBER Archive (1999)

Subject: Re: Viewing dynamic output

From: ross_at_cgl.ucsf.EDU
Date: Thu Apr 29 1999 - 16:13:05 CDT


        I am sure many people have come up with different ways to view the
        output from a dynamic run. What is your way? Anyone care to respond
        with some advice?

See 'programs.graphics' under

  http://www.amber.ucsf.edu/amber/0Net/index.html

and note that Terry Lybrand's group's MD Display (for SGI)
is included on the OM CD.

        With dynamics, I
        can see that the copious output possible complicates converting pdb from
        one format to another.

(Carnal can convert an mdcrd into lots of pdb files by the way.)

        I normally use ChemX from Oxford Molecular to
        view and manipulate structures. Can I use Xleap to view a stream of
        coordinate sets like a movie?
        
No. See MD Display or the other programs above.

Bill Ross