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Student Publications

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Alexander N, Bortolus M, Al-Mestarihi A, Mchaourab H, Meiler J. “De novo high-resolution protein structure determination from sparse spin-labeling EPR data.Structure. 2008 Feb;16(2):181-95.PMID: 18275810   PMCID2390841

 

Beel AJ, Mobley CK, Kim HJ, Tian F, Hadziselimovic A, Jap B, Prestegard JH, Sanders CR. Structural studies of the transmembrane C-terminal domain of the amyloid precursor protein (APP): does APP function as a cholesterol sensor?Biochemistry. 2008 Sep 9;47(36):9428-46. Epub 2008 Aug 15.PMID: 18702528    PMCID2572687

 

Borin BN, Krezel AM. “Structure of HP0564 from Helicobacter pylori identifies it as a new transcriptional regulator.”  Proteins. 2008 Oct;73(1):265-8. No abstract available. PMID: 18623065   PMCID2574928

 

Brosey CA, Chagot ME, Ehrhardt M, Pretto DI, Weiner BE, Chazin WJ. NMR analysis of the architecture and functional remodeling of a modular multidomain protein, RPA.J Am Chem Soc. 2009 May 13;131(18):6346-7.PMID: 19378948   PMCID2711642

 

Day, C. A., Kenworthy, A. K., “Tracking microdomain dynamics in cell membranes.Biochimica et Biophysica Acta 1788, 245-253 (2009).

 

Dong E, Smith J, Heinze S, Alexander N, Meiler J. “BCL::Align-sequence alignment and fold recognition with a custom scoring function online.Gene. 2008 Oct 1;422(1-2):41-6. Epub 2008 Jun 7.PMID: 18601985   PMCID2658673

 

Gupta SS, Borin BN, Cover TL, Krezel AM. “Structural analysis of the DNA-binding domain of the Helicobacter pylori response regulator ArsR.J Biol Chem. 2009 Mar 6;284(10):6536-45. Epub 2008 Dec 30.PMID: 19117956   PMCID2649097

 

Hirst SJ, Alexander N, McHaourab HS, Meiler J. RosettaEPR: an integrated tool for protein structure determination from sparse EPR data. J Struct Biol. 2011 Mar;173(3):506-14. Epub 2010 Oct 26. PMID: 21029778

 

Kang M., Day C. A., Drake K., Kenworthy A. K., DiBenedetto E.,“A generalization of theory for two-dimensional fluorescence recovery after photobleaching applicable to confocal laser scanning  microscopes.” Biophysical Journal 97, 1501-1511 (2009).

 

Kang M, Day CA, DiBenedetto E, Kenworthy AK. A quantitative approach to analyze binding diffusion kinetics by confocal FRAP. Biophys J. 2010 Nov 3;99(9):2737-47. PMID: 21044570

 

Kazmier K, Alexander NS, Meiler J, McHaourab HS. Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination. J Struct Biol. 2011 Mar;173(3):549-57. Epub 2010 Nov 11. PMID: 21074624

 

Kickhoefer VA, Han M, Raval-Fernandes S, Poderycki MJ, Moniz RJ, Vaccari D, Silvestry M, Stewart PL, Kelly KA, Rome LH. “Targeting vault nanoparticles to specific cell surface receptors.ACS Nano. 2009 Jan 27;3(1):27-36.PMID: 19206245   PMCID2641028

 

Lindert S, Silvestry M, Mullen TM, Nemerow GR, Stewart PL. “Cryo-electron microscopy structure of an adenovirus-integrin complex indicates conformational changes in both penton base and integrin.J Virol. 2009 Nov;83(22):11491-501. Epub 2009 Sep 2.PMID: 19726496  PMCID2772687

 

McHaourab HS, Godar JA, Stewart PL. Structure and mechanism of protein stability sensors: chaperone activity of small heat shock proteins.Biochemistry. 2009 May 12;48(18):3828-37.PMID: 19323523

 

Myers JK, Mobley CK, Sanders CR. “The peripheral neuropathy-linked Trembler and Trembler-J mutant forms of peripheral myelin protein 22 are folding-destabilized.Biochemistry. 2008 Oct 7;47(40):10620-9. Epub 2008 Sep 17.PMID: 18795802   PMCID2566783

 

Pretto DI, Tsutakawa S, Brosey CA, Castillo A, Chagot ME, Smith JA, Tainer JA, Chazin WJ. Structural dynamics and single-stranded DNA binding activity of the three N-terminal domains of the large subunit of replication protein A from small angle X-ray scattering. Biochemistry. 2010 Apr 6;49(13):2880-9. PMID: 20184389

 

Robertson PD, Warren EM, Zhang H, Friedman DB, Lary JW, Cole JL, Tutter AV, Walter JC, Fanning E, Eichman BF. “Domain architecture and biochemical characterization of vertebrate Mcm10. J Biol Chem. 2008 Feb 8;283(6):3338-48. Epub 2007 Dec 6.PMID: 18065420

 

Shell SM, Li Z, Shkriabai N, Kvaratskhelia M, Brosey C, Serrano MA, Chazin WJ, Musich PR, Zou Y.Checkpoint kinase ATR promotes nucleotide excision repair of UV-induced DNA damage via physical interaction with xeroderma pigmentosum group A.J Biol Chem. 2009 Sep 4;284(36):24213-22. Epub 2009 Jul 8.PMID: 19586908

 

Silvestry M, Lindert S, Smith JG, Maier O, Wiethoff CM, Nemerow GR, Stewart PL.  Cryo-electron microscopy structure of adenovirus type 2 temperature-sensitive mutant 1 reveals insight into the cell entry defect.J Virol. 2009 Aug;83(15):7375-83. Epub 2009 May 20.PMID: 19458007   PMCID2708647

 

Smith JG, Silvestry M, Lindert S, Lu W, Nemerow GR, Stewart PL. Insight into the mechanisms of adenovirus capsid disassembly from studies of defensin neutralization. PLoS Pathog. 2010 Jun 24;6(6):e1000959. PMID: 20585634

 

Vaithiyalingam S, Warren EM, Eichman BF, Chazin WJ. Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase. Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13684-9.Epub 2010 Jul 19. PMID: 20643958

 

Warren EM, Huang H, Fanning E, Chazin WJ, Eichman BF. “Physical interactions between Mcm10, DNA, and DNA polymerase alpha.J Biol Chem. 2009 Sep 4;284(36):24662-72. Epub 2009 Jul 16.PMID: 19608746

 

Warren EM, Vaithiyalingam S, Haworth J, Greer B, Bielinsky AK, Chazin WJ, Eichman BF. “Structural basis for DNA binding by replication initiator Mcm10.Structure. 2008 Dec 10;16(12):1892-901.PMID: 19081065  PMCID2636851

 

Yengo CM, Ananthanarayanan SK, Brosey CA, Mao S, Tyska MJ. Human deafness mutation E385D disrupts the mechanochemical coupling and subcellular targeting of myosin-1a.  Biophys J. 2008 Jan 15;94(2):L5-7. Epub 2007 Nov 2.PMID: 17981900   PMCID2157235

 

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